Epitope Mapping Services by HDX-MS | CovalX

Hydrogen/Deuterium eXchange mass spectrometry (HDX-MS) can be used to study the structural conformation of a protein or its interaction as a complex. The method is useful for studying any type of epitopes (Conformational or Linear). The protein (or complex) is submerged into D2O which will allow exposed Hydrogen atoms to exchange with Deuterium atoms.  The epitope region on the antigen will display a reduced exchange rate when complexed with the antibody.  The differences in this exchange process can occur over seconds to hour timeframe and is an indicator of the local structure.  The Deuterium is then frozen or "quenched" at low temperature and pH and the location of the Deuterium uptake can be detected accurately using high-resolution mass spectrometry.

HDX has been utilized on a research scale for many years at the academic level and within larger pharmaceutical companies. More recently, with the advancement of automated robotics, sample handling, and data analysis software, HDX can now be offered on a timescale and with sample consumptions reasonable for more mainstream analysis. CovalX is using the latest mass spectrometry equipment, HDX automation robotics and software to rapidly characterize the binding sites using HDXMS. Additionally, CovalX has technicians with combined decades of experience in optimizing and understanding HDXMS workflows.


Timeline, Sample Requirements & Resolution

  • Expertise: CovalX has over a decade of experience working analyzing protein complexes using mass spectrometry.
  • Latest Equipment: We utilize the latest mass spec, automation robotics and analysis software available.  Provide fastest, most reliable results.
  • Sample Consumption: 1 mg of antigen and 1 mg of mAb/epitope.
  • Resolution down to 1-3 amino acids.
  • Applicable for conformational, discontinuous and linear epitopes.
  • Applicable for most therapeutic proteins or antigen.
  • No need for crystallography, recombinant protein work, peptide synthesis, micro-array. The interaction is analyzed directly, by mass spectrometry.
  • Cost: CovalX offers the lowest cost available for HDX analysis. 

For example patents, publications or comparison data please see our library or contact us directly.

An overview of epitope mapping technologies can be seen here.

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